Index

A

add_task() (AsIORunner method) add_trajectory() (SQLFile method) advance() (ForwardModelBaseClass method) (Trajectory method) append_bias() (Database method) append_minmax() (Database method)

append_traj() (Database method) append_weight() (Database method) archive_trajectory() (Database method) (SQLFile method) archived_traj_list_len() (Database method) ArchivedTrajectory (class in pytams.sqldb) AsIORunner (class in pytams.taskrunner)

B

Base (class in pytams.sqldb) BaseRunner (class in pytams.taskrunner)

biases() (Database method) branch_from_trajectory() (Trajectory class method)

C

check_convergence() (ForwardModelBaseClass method) check_exit_splitting_loop() (TAMS method) clear() (ForwardModelBaseClass method)

compute_probability() (TAMS method) count_converged_traj() (Database method) count_ended_traj() (Database method) current_time() (Trajectory method)

D

dask_backend (DaskRunner attribute) DaskRunner (class in pytams.taskrunner) Database (class in pytams.database) DatabaseError

dict_to_xml() (in module pytams.xmlutils) do_multilevel_splitting() (TAMS method) done_with_splitting() (Database method) dump_file_json() (SQLFile method)

E

elapsed_time() (TAMS method) execute_promises() (AsIORunner method) (BaseRunner method) (DaskRunner method)

F

fetch_archived_trajectory() (SQLFile method) fetch_trajectory() (SQLFile method)

finish_ongoing_splitting() (TAMS method) form_trajectory_id() (in module pytams.trajectory) ForwardModelBaseClass (class in pytams.fmodel)

G

generate_trajectory_pool() (TAMS method) get_archived_trajectory_count() (SQLFile method) get_checkfile() (Trajectory method) get_current_state() (ForwardModelBaseClass method) get_index_from_id() (in module pytams.trajectory) get_last_state() (Trajectory method) get_length() (Trajectory method) get_min_scored() (in module pytams.utils) get_nbranching() (Trajectory method) get_noise() (ForwardModelBaseClass method)

get_noise_array() (Trajectory method) get_ongoing() (Database method) get_restart_at_random() (TAMS method) get_runner_type() (in module pytams.taskrunner) get_score_array() (Trajectory method) get_time_array() (Trajectory method) get_traj() (Database method) get_trajectory_count() (SQLFile method) get_transition_probability() (Database method) get_val_type() (in module pytams.xmlutils) get_workdir() (Trajectory method)

H

has_ended() (Trajectory method) has_started() (Trajectory method)

has_state() (Snapshot method) header_file() (Database method)

I

id (ArchivedTrajectory attribute) (Trajectory attribute) id() (Trajectory method) idstr() (Trajectory method)

info() (Database method) init_pool() (Database method) is_converged() (Trajectory method) is_empty() (Database method)

J

just_delay() (DaskRunner method)

K

k_split() (Database method)

L

load() (Database class method) load_data() (Database method)

lock_trajectory() (Database method) (SQLFile method)

M

make_noise() (ForwardModelBaseClass method) make_promise() (AsIORunner method) (BaseRunner method) (DaskRunner method) make_xml_snapshot() (in module pytams.xmlutils) manual_cast() (in module pytams.xmlutils) manual_cast_snapshot() (in module pytams.xmlutils) manual_cast_snapshot_noise() (in module pytams.xmlutils) manual_cast_str() (in module pytams.xmlutils) mark_trajectory_as_completed() (SQLFile method) module pytams pytams.database pytams.fmodel pytams.sqldb pytams.tams pytams.taskrunner pytams.trajectory pytams.utils pytams.worker pytams.xmlutils

moving_avg() (in module pytams.utils) ms_worker() (in module pytams.worker)

N

n_split_iter() (Database method) n_traj() (Database method) (TAMS method) n_workers() (AsIORunner method) (BaseRunner method) (DaskRunner method)

name() (Database method) (ForwardModelBaseClass class method) new_element() (in module pytams.xmlutils) noise (Snapshot attribute)

O

oneliner_ndarray() (in module pytams.xmlutils)

out_of_time() (TAMS method) overwrite_traj() (Database method)

P

parse_cl_args() (in module pytams.tams) path() (Database method) plot_score_functions() (Database method) POD_cast_dict (in module pytams.xmlutils) pool_file() (Database method) pool_worker() (in module pytams.worker) post_trajectory_branching_hook() (ForwardModelBaseClass method) post_trajectory_restore_hook() (ForwardModelBaseClass method) pytams module pytams.database module pytams.fmodel module

pytams.sqldb module pytams.tams module pytams.taskrunner module pytams.trajectory module pytams.utils module pytams.worker module pytams.xmlutils module

R

read_xml_snapshot() (in module pytams.xmlutils) release_all_trajectories() (SQLFile method) release_trajectory() (SQLFile method) remaining_walltime() (TAMS method)

reset_ongoing() (Database method) restore_from_checkfile() (Trajectory class method) run_tasks() (AsIORunner method) RunnerError

S

save_splitting_data() (Database method) save_trajectory() (Database method) score (Snapshot attribute) score() (ForwardModelBaseClass method) score_max() (Trajectory method) set_checkfile() (Trajectory method) set_current_state() (ForwardModelBaseClass method) set_k_split() (Database method) set_noise() (ForwardModelBaseClass method) set_workdir() (ForwardModelBaseClass method) (Trajectory method)

setup() (WorkerLoggerPlugin method) setup_logger() (in module pytams.utils) Snapshot (class in pytams.trajectory) SQLFile (class in pytams.sqldb) STALL_TOL (in module pytams.tams) state (Snapshot attribute) status (Trajectory attribute) step_size() (Trajectory method) store() (Trajectory method)

T

TAMS (class in pytams.tams) time (Snapshot attribute) traj_advance_with_exception() (in module pytams.worker) traj_file (ArchivedTrajectory attribute) (Trajectory attribute)

traj_list() (Database method) traj_list_len() (Database method) Trajectory (class in pytams.sqldb) (class in pytams.trajectory)

U

unlock_trajectory() (Database method) update_metadata() (Trajectory method)

update_traj_list() (Database method) update_trajectory_file() (Database method) (SQLFile method)

V

valid_statuses (in module pytams.sqldb)

W

WallTimeLimitError weights() (Database method)

worker_async() (in module pytams.worker) WorkerLoggerPlugin (class in pytams.taskrunner)

X

xml_to_dict() (in module pytams.xmlutils)

XMLUtilsError